QC of FASTQ files using FASTQC
Alignment of sequencing reads to the appropriate reference genome using BWA
Variant calling using GATK
Differential expression pipelines using STAR, RUVseq, and edgeR
Single-cell pipelines using Seurat
Differential methylation analysis
Polygenic risk score and genetic correlation analysis using PRsice
Tissue-specific variant annotation
Advanced network analysis
Transcriptome imputation
Transcriptome-based drug repositioning
Machine learning
